After using Skritter for about a month I have a few suggestions. I figured one big post would be better than a bunch of separate ones.
First, a "bury" option. In Anki, I can flip through the deck looking for the cards I want to review without affecting my study progress. This is nice if I'm tired, say, and want to study some of the easier writings, or if I'm cramming for a test and don't want to bother with the cards that won't be on it.
Second, it would be nice to be able to reset a card, or reset one of its parts. In my case, I stopped studying the definitions from one list, but the only way to prevent the definitions I've already studied from coming up again is to ban the definitions for those words. It'd be cleaner if I could just reset their definition cards.
Third, I've noticed that the software sometimes seems to set the default answer button to 2 (as opposed to 3) if you make a couple of stroke errors, but not always. I like it when it does.
Fourth, more community features - such as profile pages or an (optional) way to contact other users - would be nice.
Fifth, I've found that new cards tend to come up more often than I need them to. This probably varies between users depending on study method, so maybe an option to set the multiplier that occurs when you press "4" would help? I've also thought that allowing retention options lower than 80% might be good (not sure about that though).
Finally, http://chinese-characters.org/ is a good resource for etymologies and could be added to the lookup list, if you can figure out how to link to them.
Hope some of these are helpful.